If any of the glazes needs a slow cool to get the desired look of the glaze then no, I would not use a faster schedule. If all the glazes are fine and look the same with the kiln just doing a free fall then yes it would be okay. You might find refiring them causes the glazes to be a bit overfired if going to cone 6 as they have already had some heatwork. If in doubt I would include one pot in the next firing and see what happens.
Bigger issue would be why the bottom shelf is underfiring. Is this a kiln with a single thermocouple in the middle of the kiln? If so then going forward pack less mass in the bottom of the kiln, ie taller pots on the bottom, more density (short pots and more shelves) in the middle of the kiln. If it's a 3 zone kiln then I'ld be looking at doing a tc offset for the bottom thermocouple.
